class StatIssue

Overview

Extends GritJiraIssue to provide access to the decontamination directory for comparing FCS-GX contamination calls against BED-based calls.

Defined in:

get_assc_stats.cr

Instance Method Summary

Instance methods inherited from class GritJiraIssue

curated_dir : String curated_dir, curation_pretext(fasta, output, no_email = false) : String curation_pretext, decon_file : String decon_file, get_json : JSON::Any get_json, get_token : String get_token, get_yaml : YAML::Any get_yaml, geval_db : String geval_db, hic_read_dir : Array(YAML::Any) | Array(String) hic_read_dir, json : JSON::Any json, merged : Bool merged, ont_read_dir : String | Nil ont_read_dir, pacbio_read_dir : String | Nil pacbio_read_dir, pretext_dir : String pretext_dir, projects : Array(YAML::Any) projects, release_version : Int32 release_version, sample_dot_version : String sample_dot_version, sample_version : String sample_version, scientific_name : String scientific_name, taxonomy : String taxonomy, telomer : String telomer, tol_id : String tol_id, working_dir : String working_dir, yaml : YAML::Any yaml

Constructor methods inherited from class GritJiraIssue

new(name : String, merged : Bool = false) new

Instance Method Detail

def decon_dir : String #

Returns the parent directory of the decontamination file.


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